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Split out statistics module
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@@ -1,13 +1,9 @@
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use core::f64;
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use std::marker::PhantomData;
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use std::ops::Add;
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use std::ops::AddAssign;
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use std::ops::Div;
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use serde::ser::SerializeStruct;
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use serde::Serializer;
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use uom::num_traits;
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use uom::si;
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pub use si::f64::{Information, Ratio, Time};
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@@ -18,6 +14,7 @@ pub use uom::num_traits::Zero;
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pub use units::{InformationUnit, IsUnit, TimeUnit};
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pub mod statistics;
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mod units;
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pub trait FormatQuantity {
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@@ -83,8 +80,12 @@ impl FormatQuantity for Information {
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fn suitable_unit(&self) -> InformationUnit {
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if *self < Information::new::<kibibyte>(1.0) {
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InformationUnit::Byte
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} else {
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} else if *self < Information::new::<mebibyte>(1.0) {
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InformationUnit::KibiByte
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} else if *self < Information::new::<gibibyte>(1.0) {
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InformationUnit::MebiByte
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} else {
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InformationUnit::GibiByte
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}
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}
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@@ -132,113 +133,6 @@ where
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state.end()
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}
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pub trait UnsafeRawValue {
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fn unsafe_raw_value(&self) -> f64;
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fn unsafe_from_raw_value(value: f64) -> Self;
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}
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impl UnsafeRawValue for Time {
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fn unsafe_raw_value(&self) -> f64 {
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self.get::<second>()
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}
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fn unsafe_from_raw_value(value: f64) -> Self {
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Time::new::<second>(value)
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}
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}
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impl UnsafeRawValue for Information {
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fn unsafe_raw_value(&self) -> f64 {
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self.get::<byte>()
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}
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fn unsafe_from_raw_value(value: f64) -> Self {
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Information::new::<byte>(value)
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}
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}
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macro_rules! quantity_fn {
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($name:ident, $unwrapped_values:ident, $body:expr) => {
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pub fn $name<Q: UnsafeRawValue>(values: &[Q]) -> Q {
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let $unwrapped_values: Vec<_> = values.iter().map(|q| q.unsafe_raw_value()).collect();
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let result_value = $body;
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Q::unsafe_from_raw_value(result_value)
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}
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};
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}
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/// A max function that assumes no NaNs and at least one element
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pub fn max<V: PartialOrd>(values: impl IntoIterator<Item = V>) -> V {
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values
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.into_iter()
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.max_by(|a, b| a.partial_cmp(b).expect("No NaN values"))
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.expect("'max' requires at least one element")
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}
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/// A min function that assumes no NaNs and at least one element
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pub fn min<V: PartialOrd>(values: impl IntoIterator<Item = V>) -> V {
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values
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.into_iter()
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.min_by(|a, b| a.partial_cmp(b).expect("No NaN values"))
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.expect("'min' requires at least one element")
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}
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/// A mean function that assumes at least one element
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pub fn mean<Q, P>(values: impl IntoIterator<Item = Q>) -> Q
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where
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Q: AddAssign + num_traits::Zero + Div<Ratio, Output = P>,
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P: Into<Q>,
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{
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let mut sum = Q::zero();
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let mut count = 0;
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for value in values {
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sum += value;
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count += 1;
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}
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let count = Ratio::new::<ratio>(count as f64);
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(sum / count).into()
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}
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pub fn median<Q, P>(values: impl IntoIterator<Item = Q>) -> Q
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where
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Q: Copy + PartialOrd + Add<Output = Q> + Div<Ratio, Output = P>,
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P: Into<Q>,
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{
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let mut values = values.into_iter().collect::<Vec<_>>();
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values.sort_by(|a, b| a.partial_cmp(b).expect("No NaN values"));
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let len = values.len();
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if len % 2 == 0 {
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let mid = len / 2;
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let a = &values[mid - 1];
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let b = &values[mid];
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((*a + *b) / Ratio::new::<ratio>(2.)).into()
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} else {
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values[len / 2]
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}
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}
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quantity_fn!(standard_deviation, values, {
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let mean_value = statistical::mean(&values);
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statistical::standard_deviation(&values, Some(mean_value))
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});
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pub fn modified_zscores<Q: UnsafeRawValue>(values: &[Q]) -> Vec<f64> {
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let values: Vec<_> = values.iter().map(|q| q.unsafe_raw_value()).collect();
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crate::outlier_detection::modified_zscores(&values)
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}
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#[test]
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fn test_max() {
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assert_eq!(1.0, max([1.0]));
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assert_eq!(-1.0, max([-1.0]));
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assert_eq!(-1.0, max([-2.0, -1.0]));
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assert_eq!(1.0, max([-1.0, 1.0]));
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assert_eq!(1.0, max([-1.0, 1.0, 0.0]));
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}
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#[test]
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fn test_time() {
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let time = Time::new::<millisecond>(123.4);
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@@ -266,32 +160,7 @@ fn test_information() {
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}
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#[test]
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fn test_format() {
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let time = Time::new::<millisecond>(123.4);
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assert_eq!(time.format(TimeUnit::Second), "0.123 s");
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assert_eq!(time.format(TimeUnit::MilliSecond), "123.4 ms");
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assert_eq!(time.format(TimeUnit::MicroSecond), "123400.0 µs");
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let peak_memory_usage = Information::new::<kibibyte>(8.);
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assert_eq!(peak_memory_usage.format(InformationUnit::Byte), "8192 B");
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assert_eq!(
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peak_memory_usage.format(InformationUnit::KibiByte),
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"8.0 KiB"
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);
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}
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#[test]
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fn test_mean() {
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let values = vec![
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Time::new::<millisecond>(123.4),
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Time::new::<millisecond>(234.5),
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];
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let result = mean(values.into_iter());
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assert_eq!(result.format(TimeUnit::MilliSecond), "178.9 ms");
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}
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#[test]
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fn test_suiteable_unit() {
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fn test_suiteable_unit_time() {
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assert_eq!(Time::new::<second>(1.3).suitable_unit(), TimeUnit::Second);
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assert_eq!(Time::new::<second>(1.0).suitable_unit(), TimeUnit::Second);
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assert_eq!(
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@@ -312,6 +181,41 @@ fn test_suiteable_unit() {
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);
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}
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#[test]
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fn test_suitable_unit_information() {
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assert_eq!(
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Information::new::<byte>(512.0).suitable_unit(),
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InformationUnit::Byte
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);
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assert_eq!(
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Information::new::<byte>(2048.0).suitable_unit(),
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InformationUnit::KibiByte
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);
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assert_eq!(
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Information::new::<byte>(2_097_152.0).suitable_unit(),
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InformationUnit::MebiByte
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);
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assert_eq!(
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Information::new::<byte>(2_147_483_648.0).suitable_unit(),
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InformationUnit::GibiByte
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);
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}
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#[test]
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fn test_format() {
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let time = Time::new::<millisecond>(123.4);
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assert_eq!(time.format(TimeUnit::Second), "0.123 s");
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assert_eq!(time.format(TimeUnit::MilliSecond), "123.4 ms");
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assert_eq!(time.format(TimeUnit::MicroSecond), "123400.0 µs");
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let peak_memory_usage = Information::new::<kibibyte>(8.);
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assert_eq!(peak_memory_usage.format(InformationUnit::Byte), "8192 B");
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assert_eq!(
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peak_memory_usage.format(InformationUnit::KibiByte),
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"8.0 KiB"
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);
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}
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#[test]
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fn test_format_duration_unit_with_unit() {
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let out = Time::new::<second>(1.3).format(TimeUnit::Second);
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@@ -323,34 +227,3 @@ fn test_format_duration_unit_with_unit() {
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let out = Time::new::<second>(1.3).format(TimeUnit::MicroSecond);
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assert_eq!("1300000.0 µs", out);
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}
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#[test]
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fn statistics() {
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let values = vec![
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Time::new::<second>(1.0),
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Time::new::<second>(2.0),
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Time::new::<second>(3.0),
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];
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assert_eq!(
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mean(values.iter().copied()).format(TimeUnit::Second),
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"2.000 s"
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);
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assert_eq!(
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median(values.iter().copied()).format(TimeUnit::Second),
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"2.000 s"
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);
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assert_eq!(min(&values).format(TimeUnit::Second), "1.000 s");
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assert_eq!(max(&values).format(TimeUnit::Second), "3.000 s");
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assert_eq!(
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standard_deviation(&values).format(TimeUnit::Second),
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"1.000 s"
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);
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let values = vec![
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Information::new::<byte>(1.0),
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Information::new::<byte>(2.0),
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Information::new::<byte>(3.0),
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];
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mean(values.iter().copied()).format(InformationUnit::Byte);
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}
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